People
Lab Members
Principal investigator · Postdocs · Graduate students · Alumni
The lab is hosted in the Department of Computer Science and Information Engineering at National Taiwan University, with students co-supervised across BEBI, GSB, MHI and GINM.
Principal Investigator
Yufeng Jane Tseng (曾宇鳳)
Professor
| yjtseng@csie.ntu.edu.tw | |
| Telephone | +886-2-33664888 #529 |
| Office | Room 529, Der-Tian Hall, Department of Computer Science and Information Engineering, National Taiwan University |
| ORCID | 0000-0002-8461-6181 |
Administrative and Research Staff
Che-Yu Lee (李哲宇)
Zhi-Yu Yeh (葉芷瑜)
Postdoctoral Researchers
Tien-Chueh Kuo (郭天爵)
Pei-Hua Wang (王珮驊)
Doctoral Students
Yu-Ke Wang (王又可)
Allen (杜博文)
梁家維
嚴正翰
許郁廷
蔡哲維
Master's Students
| Name | Program |
|---|---|
| 廖翊婷 | Graduate Institute of Biomedical Electronics and Bioinformatics |
| 吳家欣 | Department of Computer Science and Information Engineering |
| 李曄瑋 | Department of Computer Science and Information Engineering |
| Kevin (林之耀) | Master Program in Health Informatics |
| 劉晉宏 | Department of Computer Science and Information Engineering |
| 周佳葵 | Graduate Institute of Networking and Multimedia |
| Lya (柯雅文) | Graduate Institute of Biomedical Electronics and Bioinformatics |
| 洪譽侖 | Department of Computer Science and Information Engineering |
| 陳弈辰 | Master Program in Health Informatics |
| 陳筱蓁 | Graduate Institute of Biomedical Electronics and Bioinformatics |
| 黃子陽 | Genome and Systems Biology Degree Program |
| 劉庭伊 | Master Program in Health Informatics |
| 蔡中愷 | Graduate Institute of Biomedical Electronics and Bioinformatics |
| 鄭鈞文 | Master Program in Health Informatics |
| 吳宗鴻 | Department of Computer Science and Information Engineering |
| 洪聖棻 | Graduate Institute of Biomedical Electronics and Bioinformatics |
| 范軒豪 | Graduate Institute of Biomedical Electronics and Bioinformatics |
| Gracia (翁平恵) | Graduate Institute of Biomedical Electronics and Bioinformatics |
| Bradley (陳嘉緯) | Master Program in Health Informatics |
| 馮聖晉 | Graduate Institute of Biomedical Electronics and Bioinformatics |
| 黃聖瀚 | Master Program in Health Informatics |
| 蕭怡菱 | Graduate Institute of Biomedical Electronics and Bioinformatics |
| 戴筱娟 | Graduate Institute of Biomedical Electronics and Bioinformatics |
| 韓宇軒 | Graduate Institute of Biomedical Electronics and Bioinformatics |
Undergraduate Researchers
| Name | Program |
|---|---|
| 宋和峻 | Department of Computer Science and Information Engineering |
| 洪廉詠 |
Alumni
| Year | Name | Program | Thesis |
|---|---|---|---|
| 2026 | 丁瓘茵 | BEBI MS | When Retrieval Helps and Hurts: Evaluating the Safety–Coherence Trade-off in Retrieval-Augmented CBT Agents |
| 2026 | Ting-Jung Ku (古庭榮) | GINM MS | A De Novo Generative AI Framework Enabling Discovery of Non-Hallucinogenic 5-HT2A Agonists Toward Antidepressant Drug Discovery |
| 2026 | Che-Yu Lee (李哲宇) | BEBI MS | |
| 2026 | Chen-Hsiang Kao (高振翔) | MHI MS | SchizoTrain: A Virtual Patient System for Training Raters in Schizophrenia Negative Symptom Assessment |
| 2026 | Dwayne Reinaldy (許漢強) | MHI MS | A Multimodal Machine Learning Framework for Distinguishing Tardive Dyskinesia via Voice and Facial Movement Analysis |
| 2026 | Yun-Chi Chen (陳韻淇) | MS | |
| 2026 | 黃靖蓉 | BEBI MS | |
| 2026 | Zhi-Yu Yeh (葉芷瑜) | GSB MS | A Conversational AI Assistant for Literature Searching and Data Analysis in Metabolomics |
| 2025 | 王仁宏 | BEBI MS | Gas chromatography-mass spectrometry-based untargeted metabolomics reveals metabolic perturbations in acute lung injury patients |
| 2025 | Heng Wang (王恆) | CSIE MS | DeePFAS: Deep Learning-Enabled Rapid Annotation of PFAS for Enhancing Non-Targeted Screening through Spectral Encoding and Latent Space Analysis |
| 2025 | Jie-Rui Tien (田傑睿) | GSB MS | Enhancing the Accuracy and Reliability of Predicting the Mutagenicity of Nitrosamines Using Synthetic Data and Explainable Artificial Intelligence, with Applications to Drug Synthesis Pathway Planning |
| 2025 | 吳偉業 | CSIE MS | |
| 2025 | Shou-Zhi Lin (林首志) | CSIE MS | Breathomics Analysis of the Exhaled Breath Condensate of Lung Cancer Patients |
| 2025 | Chia-I. Chang (張家瑜) | BEBI MS | |
| 2025 | Kuang-Cheng Hsu (許洸誠) | CSIE MS | Interpretable graph neural networks for predicting P-glycoprotein substrates |
| 2025 | Tzu-Hui Yu (游子慧) | BEBI MS | Patient-LITE: Empowering Patients with a Generalizable LLM-Based Questionnaire Generator for Accelerated Trial Eligibility Screening |
| 2025 | Li-Wei Huang (黃立緯) | Administrative Assistant | |
| 2024 | 林詩敏 | CSIE MS | Alzheimer’s Disease Drug Discovery through De Novo Molecular Design via Multi-objective Optimization on Generative Network |
| 2024 | 詹易玹 | BEBI MS | |
| 2024 | Chih-Chi Li (黎芷琪) | BEBI PhD | |
| 2024 | Yue-Chen Jhong (鍾岳辰) | BEBI MS | Predicting human liver microsomal stability with a regressive graph neural network model and clinical breathomics database |
| 2024 | 楊美美 (Danielle Penella P. Yu) | MHI MS | Investigating Transfer, Few-Shot, and Meta Learning for Biomarker Identification in Resting-State and Auditory Steady-State Response EEG-Based Diagnosis of Neurodegenerative Diseases with Interpretable Cognitive Assessments |
| 2023 | Chien Lee (李謙) | CSIE MS | Comparative Analysis of Protein Modelling Methods and Exploration of Quantum-Inspired Computing for Natural Product Structure Elucidation |
| 2023 | Olivia A. Lin (林盈安) | BEBI PhD | |
| 2023 | Po-Yang Yao (姚柏仰) | BEBI MS | 3D Mass Spectrometry Imaging Reconstruction Protocol for Enhanced Spatial Profiling and Molecular Mapping with Example Application of Schizophrenia Mouse Brain |
| 2023 | Ching-Yao Chang (張景曜) | BEBI MS | Exploring Lipid Disturbances and its Spatial Association with α-Synuclein Aggregation in MSA Patient Brain Regions via Desorption Electrospray Ionization Mass Spectrometry Imaging |
| 2023 | Pei-Jiun Chuang (莊珮君) | Research Assistant | |
| 2023 | Yu-Yuan Yang (楊淯元) | BEBI MS | FastEval Parkinsonism: An instant deep learning-based online self-evaluation system for the diagnosis of Parkinson's symptoms with hand videos using finger tapping |
| 2022 | Pei-Hua Wang (王珮驊) | BEBI PhD | IntelliPatent: an Intelligent System for Fast Chemical Patent Claim Drafting |
| 2022 | Yu-Hao Ni (倪宇澔) | BEBI MS | A Comprehensively-Curated Dataset for Prediction of Cytochrome P450 Isoforms Mediated Metabolism: A Systematic Evaluation of Machine Learning and Deep Learning Methods |
| 2022 | Chi-Wei Kao (高紀威) | CSIE MS | Simultaneous optimization of drug properties with Pareto efficiency |
| 2022 | Jen-Hao Chen (陳人豪) | CSIE PhD | Computer-Aided Drug Design for molecular property prediction |
| 2021 | Ming-Yang Ho (何明洋) | BEBI MS | 帕金森氏症人工智慧綜合判讀系統 |
| 2021 | Bo-Jhang Lin (林柏璋) | BEBI MS | Web Service and Application for Automatic Registration with Mass Spectrometry Imaging and Histology |
| 2020 | Chih-Tim Hsu (許至廷) | BEBI MS | Effect of stem-cell-exosome-embedded GelMA hydrogel fabricated by 3D bioprinting on wound healing in streptozotocin-induced diabetic rats |
| 2019 | 田耘政 | Research Assistant | |
| 2019 | 卓東昇 | Research Assistant | |
| 2019 | Chia-Yu Chang (張家瑜) | BEBI MS | Longitudinal metabolomic data analysis of Chinese hamster ovary cells for mAb production optimization |
| 2019 | Ciao-Sin Chen (陳巧欣) | Research Assistant | |
| 2019 | Yi Hsiao (蕭毅) | BEBI MS | 虛擬老鼠:系統性電腦預測臨床前ADMET參數 |
| 2018 | Ming-Tsung Hsu (徐銘聰) | GSB PhD | Molecular Identification of Lung Cancer Stem Cell-Derived Exosomes |
| 2018 | Ping-Han Hsieh (謝秉翰) | BEBI MS | A Searching Tool for Comparing the Structure Similarity of Controlled Drugs |
| 2017 | 何蓓林 | Administrative Assistant | |
| 2017 | 呂宗諭 | Research Assistant | |
| 2017 | Yi-Ru Lin (林宜儒) | BEBI MS | 一維質子核磁共振代謝體圖譜之線上自動分析服務 |
| 2017 | Lu-Chi Liu (劉律琪) | CSIE MS | G蛋白偶聯受體之多標靶、老藥新用與副作用預測 |
| 2017 | Dong-Ming Tsai (蔡東銘) | BEBI PhD | 基於親水作用液相層析質譜儀的代謝體研究- 化學計算方法開發與腹膜透析引流液分析 |
| 2017 | Yu-Yen Cheng (鄭羽嫣) | BEBI MS | 脂質辨識加速工具：自動處理和辨識液相層析串聯質譜脂體學資料 |
| 2016 | 巫茹怡 | Undergraduate Researcher | |
| 2016 | 曾子家 | Undergraduate Researcher | |
| 2015 | Yi-Shu Tu (杜羿樞) | BEBI PhD | 電腦設計胜肽抑制劑、次世代定序軟體及建構定量構效模型 |
| 2015 | Tien-Chueh Kuo (郭天爵) | BEBI PhD | Analysis and Tool of Metabolomics in Systems Biology and a Lipidomics Knowledgebase |
| 2015 | Jia-Wei Liu (劉家瑋) | GINM MS | 搭配頻寬估測方法在核密度估測液相層析質譜儀資料之滯留時間校正與一維質子核磁共振代謝體圖譜之相位校正 |
| 2014 | San-Yuan Wang (王三源) | CSIE PhD | 離子軌跡偵測與訊號校正於高解析液相層析串聯飛行時間質譜儀平台之代謝體學應用 |
| 2014 | 江品億 | Research Assistant | |
| 2014 | 杜宗霖 | ||
| 2014 | Chieh Lin (林潔) | CSIE MS | PolyName2Structure 系統 - 利用預測聚合物單體結構的反應途徑，來達成從聚合物名稱轉成結構的目標 |
| 2014 | 唐皇 | ||
| 2014 | Kuo-Hsiang Hsu (徐國翔) | BEBI MS | 艾美氏致突變性試驗的化學結構之骨架分析 |
| 2014 | 張乃文 | Doctoral Student | |
| 2014 | Brendan Reilly (路本庭) | ||
| 2014 | Cheng-En Tan (譚承恩) | CSIE MS | IDMass 2.0: Component Extraction, Identification and Statistics GUI Processing Toolkit for GC-MS |
| 2013 | Kuo-Ching Wang (王國清) | BEBI PhD | Baseline Correction, Spectral Deconvolution of Metabolomic 1D 1H-NMR Spectra and Their Applications in Metabolomic Characterization of Welding Fumes Exposure |
| 2013 | Chi-Yu Shao (邵祈諭) | BEBI MS | 肝臟與經修飾奈米碳管毒性模型 |
| 2013 | Chia-Yun Chang (張嘉芸) | Pharmacy PhD | 老藥新用及細胞毒性分析與選擇性偏優化 |
| 2013 | 陳加頎 | ||
| 2013 | 陳奕竹 | ||
| 2013 | 陳琤 | ||
| 2013 | 彭康偉 | ||
| 2013 | Alioune Schurz (舒艾琉) | GINM MS | GPU在結構計算上的應用 |
| 2013 | 黃雍文 | Graduate Student | |
| 2013 | 楊裕宏 | ||
| 2013 | 盧泓志 | Undergraduate Researcher | |
| 2013 | Yu-Yen Chung (鍾宇彥) | BEBI MS | 去噪、成分分離及辨識於氣相層析串聯飛行時間質譜儀之工具套件 |
| 2012 | 林群皓 | Undergraduate Researcher | |
| 2012 | Ze-Hao Lin (林澤豪) | BEBI MS | 分子螢光分類模型 |
| 2012 | Sing-Zuo Chen (陳星佐) | BEBI MS | 在奈米碳管回歸模型以及細胞毒性分類模型在支持向量機上的應用 |
| 2012 | 陳柏安 | Undergraduate Researcher | |
| 2012 | Bo-Han Su (蘇柏翰) | CSIE PhD | 新藥設計及化學結構組合最佳化與心毒性模擬 |
| 2011 | Tze-Feng Tian (田士鋒) | EE MS | 二維氣相層析質譜圖之滯留時間校準演算法 |
| 2011 | Tsung-Jung Ho (何宗融) | CSIE MS | 滯留時間校準、去噪與化合物辨識在代謝體學上之應用 |
| 2011 | 沈子琪 | Undergraduate Researcher | |
| 2011 | Fang-Yu Lin (林芳宇) | BEBI MS | 以蛋白質結構為基礎之合成可行性先導藥物最適化電腦輔助藥物設計 |
| 2011 | 柯伊庭 | Undergraduate Researcher | |
| 2011 | 張軍裕 | Undergraduate Researcher | |
| 2011 | 黃庭箴 | Undergraduate Researcher | |
| 2011 | 楊應甲 | ||
| 2011 | Yeu-Chern Harn (韓羽晨) | GINM MS | 結構獵人：預測混合物中新的化學結構 |
| 2010 | Meng-Yu Shen (沈孟俞) | CSIE MS | 支持向量機在hERG毒性分類模型及蛋白質定位突變法的應用 |
| 2010 | 黃永沅 | ||
| 2010 | Yi-Syuan Huang (黃薏璇) | BEBI MS | 分子片段組合之新穎結構設計於抗血管內皮生長因子受體藥物開發 |
| 2010 | Cheng-Chieh Tsai (蔡政倢) | BEBI MS | 蛇毒 C 型凝集素衍生之拮抗劑與血小板醣蛋白陸交互作用的結構探討 |
| 2009 | Wen-Yi Kang (康文譯) | BEBI MS | 不同PT/INR危急值警示系統與warfarin使用安全性之評估 |
| 2009 | Dong-Ming Tsai (蔡東銘) | BEBI MS | 馬兜鈴酸腎毒性在囓齒類動物的代謝體學研究 |
| 2008 | 江任捷 | ||
| 2008 | Tong-Jung Wu (吳東潤) | CSIE MS | 4D-QSAR分析TW01系列類似物之定量構效關係 |
| 2008 | 葉欣宜 |